Selected key publications
Holt JT, Butenschon M, Wakelin SL, Artioli Y, Allen JI, (2012). Oceanic controls on the primary production of the northwest European continental shelf: model experiments under recent past conditions and a potential future scenario. Biogeosciences, 9, 97 : 117
Allen JI, (2011). Marine Environment & Human Health: An Overview; in Marine Environment and Human Health (Ed R Hester) Royal Society of Chemistry IEST Vol. 33.
Allen JI, Polimene L, (2011). Linking physiology to ecology: towards a new generation of plankton models. Journal of Plankton Research 33(7): 989-997.
Rose, K.A., Allen, J.I., Artioli, Y., Barange, M., Blackford, J., Carlotti, F., Cropp, R., Daewel, U., Flynn, K.J., Hill, S., Hille Ris Lambers, R., Huse, G., Mackinson, S., Megrey, B., Moll, A., Rivkin, R., Salihoglu, B., Schrum, C., Shannon, L., Shin, Y-J., Smith, S.L., Smith, C., Solidoro, C., St. John, M., Zhou, M. (2010). End-To-End Models for the Analysis of Marine Ecosystems: Challenges, Issues, and Next Steps. Marine and Coastal Fisheries: Dynamics, Management, and Ecosystem Science, 2, 115 : 130
Barange M, Allen I, Allison E, Badjeck M-C, Blanchard J, Drakeford B, Dulvy NK, Harle J, Holmes R, Holt J, Jennings S, Lowe J, Merino G, Mullon C, Pilling G, Tompkins E, Werner F. in press. Predicting the impacts and socio-economic consequences of climate change on global marine ecosystems and fisheries: the QUEST_Fish framework. In: Ommer, R. (editor). Coping with climate change in marine socio-ecological systems. Blackwell FAR Series.
Allen JI, Aiken J, Anderson TR, Buitenhuis E, Cornell S, Geider RJ, Haines K, Hirata T, Holt J, Le Quere C, Hardman-Mountford N, Ross ON, Sinha B, While J. 2010. Marine ecosystem models for earth systems applications: The MarQUEST experience. Journal of Marine Systems, 81(1-2), 19-33.
Allen JI, Fulton EA. 2010. Top-down, bottom-up or middle-out? Avoiding extraneous detail and over-generality in marine ecosystem models. Progress in Oceanography, 84(1-2), 129-133.
Allen JI, Somerfield PJ. 2009. A multivariate approach to model skill assessment. Journal of Marine Systems, 76(1-2), 83-94.
Holt J, Harle J, Proctor R, Michel S, Ashworth M, Batstone C, Allen I, Holmes R, Smyth T, Haines K, Bretherton D, Smith G. 2009. Modelling the global coastal ocean. Philosophical Transactions of the Royal Society, Series A, 367(1890), 939-951.
Stow CA, Jolliff J, McGillicuddy DJ, Jr, Doney SC, Allen JI, Friedrichs MAM, Rose KA, Wallheadg P. 2009. Skill assessment for coupled biological/physical models of marine systems. Journal of Marine Systems, 76(1-2), 4-15.
Allen JI, Holt JT, Blackford J, Proctor R. 2007. Error quantification of a high-resolution coupled hydrodynamic-ecosystem coastal-ocean model: Part 2. Chlorophyll-a, nutrients and SPM. Journal of Marine Systems, 68(3-4), 381-404.
Allen JI, Somerfield PJ, Gilbert FJ. 2007. Quantifying uncertainty in high-resolution coupled hydrodynamic-ecosystem models. Journal of Marine Systems, 64(1-4), 3-14.
Blackford JC, Allen JI, Gilbert FJ. 2004. Ecosystem dynamics at six contrasting sites: a generic modelling study. Journal of Marine Systems, 52(1-4), 191-215.
Pinardi N, Allen I, Demirov E, De Mey P, Korres G, Lascaratos A, Le Traon PY, Maillard C, Manzella G, Tziavos C. 2003. The Mediterranean ocean forecasting system: first phase of implementation (1998-2001). Annales Geophysicae, 21(1), 3-20.
Taylor AH, Allen JI, Clark PA. 2002. Extraction of a weak climatic signal by an ecosystem. Nature, 416(6881), 629-632.
Allen JI, Blackford J, Holt J, Proctor R, Ashworth M, Siddorn J. 2001. A highly spatially resolved ecosystem model for the North West European Continental Shelf. Sarsia, 86(6), 423-440.